[test] results files with new data

test_results/test_mcq_imputations.err

+Le chargement a nécessité le package : methods
+Warning message:
+replacing previous import ‘data.table::melt’ by ‘reshape2::melt’ when loading ‘MassChroqR’ 

test_results/test_mcq_imputations.out

+[1] ‘0.3.4’
+*********************************************
+  Test mcq imputation
+*********************************************
+[1] "MY_ERROR:   Error in mcq.impute(badobject): the class \"NULL\" is not taken into account by mcq.impute\n"
+#####################################
+ error message expected OK
+#####################################
+[1] "MY_ERROR:   Error in mcq.impute(protPep): mcqProtPep object is not normalized\n"
+#####################################
+ error message expected OK
+#####################################
+normalizing samples using the percent method
+ summary protPep
+number of proteins : 1792
+number of XICs : 220751
+number of peptiz : 12295
+number of peptides : 10502
+number of samples : 19
+number of NA values : 12854
+% of NA values : 5.50245071809251
+ head tprotPep
+            sampa0   sampa1   sampa2   sampa3   sampa4   sampa5   sampa6
+pepa1a1-2 7.423686 7.671254 7.486355 7.580716 7.654232 7.524274 7.402390
+pepa1a2-2 9.601933 9.658831 9.509680 9.598897 9.623446 9.485472 9.591529
+pepa1a2-3 7.216704 7.610349 7.423978 7.621095 7.587914 7.534637 7.450581
+pepa1a3-2 7.415369 7.373889 7.252050 7.362876 7.385289 7.357210 7.434043
+pepa1a3-3 7.267908 7.272452 7.118789 7.261184 7.261903 7.166390 7.031930
+pepa1a4-2 6.856519 7.109508 7.403168 7.212882 7.278143 7.389129 7.367794
+            sampa7   sampa8   sampa9  sampb10  sampb11  sampb12  sampb13
+pepa1a1-2 7.451958 7.588657 7.426874 7.410186 7.588086 7.553326 7.412543
+pepa1a2-2 9.647076 9.702412 9.665307 9.525762 9.671924 9.696974 9.624450
+pepa1a2-3 7.625205 7.507105 7.413636 7.335447 7.434978 7.459822       NA
+pepa1a3-2 7.431330 7.451556 7.314685 7.306142 7.409921 7.462535 7.265589
+pepa1a3-3 7.289382 7.287420 7.152874 7.147473 7.305740 7.327916 7.126872
+pepa1a4-2 7.209917 7.071661 7.278200 7.370468 7.122967 7.151566 7.340171
+           sampb14  sampb15  sampb16  sampb17  sampb18
+pepa1a1-2 7.421672 7.455389 7.618898 7.356756 7.400039
+pepa1a2-2 9.576142 9.539685 9.681588 9.617048 9.569641
+pepa1a2-3 7.303142 7.460012 7.485740 7.324554 7.534527
+pepa1a3-2 7.213548 7.417854 7.373416 7.294302 7.244993
+pepa1a3-3 7.105079 7.252598 7.308202 7.166673 7.172277
+pepa1a4-2 7.251826 7.140626 7.033712 7.141301 7.188409
+
+#####################################
+      % of missing values before imputation =  5.502451 
+ 		normalize protPep is OK
+#####################################
+
+#####################################
+      Number of proteins totally missing in at least one sample = 5 
+      Imputation is OK
+#####################################
+ summary protPepnona
+number of proteins : 1792
+number of XICs : 220751
+number of peptiz : 12295
+number of peptides : 10502
+number of samples : 19
+number of imputated XIC values : 229920
+number of NA values : 40
+% of NA values : 0.0171229211703517
+ head tprotPepnona
+             sampa0   sampa1   sampa2   sampa3   sampa4   sampa5   sampa6
+pepa1a1-2  7.423686 7.671254 7.486355 7.580716 7.654232 7.524274 7.402390
+pepa1a3-2  7.415369 7.373889 7.252050 7.362876 7.385289 7.357210 7.434043
+pepa1a3-3  7.267908 7.272452 7.118789 7.261184 7.261903 7.166390 7.031930
+pepa1b13-2 8.099651 8.022425 7.748001 7.858016 7.919630 7.746351 7.805174
+pepa1b13-3 7.667545 7.531653 7.273830 7.406195 7.471478 7.266206 7.349920
+pepa1b14-2 7.664463 7.829684 7.664012 7.808159 7.790417 7.690689 7.636261
+             sampa7   sampa8   sampa9  sampb10  sampb11  sampb12  sampb13
+pepa1a1-2  7.451958 7.588657 7.426874 7.410186 7.588086 7.553326 7.412543
+pepa1a3-2  7.431330 7.451556 7.314685 7.306142 7.409921 7.462535 7.265589
+pepa1a3-3  7.289382 7.287420 7.152874 7.147473 7.305740 7.327916 7.126872
+pepa1b13-2 7.969074 8.098796 7.765779 7.766157 7.990886 7.993305 7.743233
+pepa1b13-3 7.480393 7.665615 7.208693 7.327775 7.533940 7.545954 7.334690
+pepa1b14-2 7.779317 7.881590 7.715550 7.566768 7.654046 7.689110 7.621204
+            sampb14  sampb15  sampb16  sampb17  sampb18
+pepa1a1-2  7.421672 7.455389 7.618898 7.356756 7.400039
+pepa1a3-2  7.213548 7.417854 7.373416 7.294302 7.244993
+pepa1a3-3  7.105079 7.252598 7.308202 7.166673 7.172277
+pepa1b13-2 7.766654 7.977187 7.958820 7.763589 7.778000
+pepa1b13-3 7.347396 7.527754 7.460161 7.311394 7.338149
+pepa1b14-2 7.671699 7.774755 7.869836 7.591063 7.582651
+
+#####################################
+      % of missing values after imputation =  0.017123 
+ 		imputation is OK
+#####################################
+
+#####################################
+      Nb of peptiz =  12295 
+ 		imputation is OK
+#####################################
+
+#####################################
+      Nb of samples =  19 
+ 		imputation is OK
+#####################################
+*********************************************
+ if KO  : ctrl files in /tmp
+*********************************************